RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40930.1 View Network Show in Genome Browser |
| Other Names | Os04g0486400 |
| Description | MYB family transcription factor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24296450-24301211 Nucleotide Length: 1158 |
| Protein-coding | LOC_Os04g40930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g63280 LOC_Os03g13170 |
| Downstream Genes | LOC_Os09g20010 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40930.1 |
| Rice Genome Annotation | LOC_Os04g40930.1 |
| Ricechip | LOC_Os04g40930.1 |
| KEGG | osa:4336214 dosa:Os04t0486400-01 |
| Entrez-Gene | 4336214 |