RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40950.2 View Network Show in Genome Browser |
| Other Names | Os04g0486600 |
| Description | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24305449-24309169 Nucleotide Length: 888 |
| Protein-coding | LOC_Os04g40950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g07260 LOC_Os02g51590 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os01g58610 LOC_Os03g14450 LOC_Os02g38920 LOC_Os02g02890 LOC_Os02g08180 LOC_Os04g37600 More.. |
| Downstream Genes | LOC_Os06g45710 LOC_Os09g20820 LOC_Os06g14740 LOC_Os05g41640 LOC_Os08g03290 LOC_Os11g09280 LOC_Os05g01600 LOC_Os10g30550 LOC_Os04g58110 LOC_Os08g04460 LOC_Os07g48244 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40950.2 |
| Rice Genome Annotation | LOC_Os04g40950.2 |
| Ricechip | LOC_Os04g40950.2 |
| KEGG | osa:4336216 dosa:Os04t0486600-01 |
| Entrez-Gene | 4336216 |