RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40990.1 View Network Show in Genome Browser |
| Other Names | Os04g0486950 |
| Description | malate synthase, glyoxysomal, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24325764-24328254 Nucleotide Length: 1704 |
| Protein-coding | LOC_Os04g40990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g25410 LOC_Os02g44680 LOC_Os01g46070 LOC_Os01g08020 LOC_Os02g02700 LOC_Os03g44150 LOC_Os01g24030 LOC_Os03g05300 LOC_Os03g02680 LOC_Os03g15050 LOC_Os01g10050 More.. |
| Downstream Genes | LOC_Os07g34520 LOC_Os12g41250 LOC_Os10g42960 LOC_Os05g49880 LOC_Os10g13700 LOC_Os07g38270 LOC_Os07g38260 LOC_Os04g58390 LOC_Os07g38280 LOC_Os12g09280 LOC_Os10g37420 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00630 rn01100 rn01120 rn00620 |
| Metacyc Pathways | P105-PWY GLYOXDEG-PWY GLYOXYLATE-BYPASS |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40990.1 |
| Rice Genome Annotation | LOC_Os04g40990.1 |
| Ricechip | LOC_Os04g40990.1 |
| KEGG | osa:9268154 dosa:Os04t0486950-01 |
| Entrez-Gene | 9268154 |