RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g41140.1 View Network Show in Genome Browser |
| Other Names | Os04g0488500 |
| Description | PPR repeat containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24399162-24402461 Nucleotide Length: 2730 |
| Protein-coding | LOC_Os04g41140 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g52700 LOC_Os01g57610 LOC_Os02g52710 LOC_Os02g12790 LOC_Os02g54500 LOC_Os03g14980 LOC_Os01g15020 LOC_Os03g50130 LOC_Os03g48090 LOC_Os03g15120 LOC_Os01g67750 More.. |
| Downstream Genes | LOC_Os09g24260 LOC_Os07g01850 LOC_Os04g49660 LOC_Os05g43374 LOC_Os06g49970 LOC_Os07g32530 LOC_Os05g42150 LOC_Os09g28420 LOC_Os06g01680 LOC_Os08g36900 LOC_Os06g49080 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | FAO-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g41140.1 |
| Rice Genome Annotation | LOC_Os04g41140.1 |
| Ricechip | LOC_Os04g41140.1 |
| KEGG | osa:4336229 dosa:Os04t0488500-01 |
| Entrez-Gene | 4336229 |