RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g41229.1 View Network Show in Genome Browser |
| Other Names | Os04g0489600 |
| Description | helix-loop-helix DNA-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24461146-24468949 Nucleotide Length: 1110 |
| Protein-coding | LOC_Os04g41229 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g39140 LOC_Os01g04800 |
| Downstream Genes | LOC_Os04g44354 LOC_Os04g47780 LOC_Os11g12340 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g41229.1 |
| Rice Genome Annotation | LOC_Os04g41229.1 |
| Ricechip | LOC_Os04g41229.1 |
| KEGG | osa:4336235 dosa:Os04t0489600-02 |
| Entrez-Gene | 4336235 |