RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g41260.2 View Network Show in Genome Browser |
| Other Names | Os04g0490000 |
| Description | amine oxidase, flavin-containing, domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24480757-24481725 Nucleotide Length: 507 |
| Protein-coding | LOC_Os04g41260 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g22060 LOC_Os01g43390 LOC_Os03g21900 LOC_Os01g51320 LOC_Os03g08570 LOC_Os02g51880 LOC_Os02g17700 LOC_Os01g45760 LOC_Os02g37010 LOC_Os01g72130 LOC_Os03g06190 More.. |
| Downstream Genes | LOC_Os07g10490 LOC_Os09g20284 LOC_Os12g16650 LOC_Os08g04780 LOC_Os07g43370 LOC_Os04g53190 LOC_Os10g40570 LOC_Os09g20260 LOC_Os07g02130 LOC_Os05g29760 LOC_Os10g30100 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1427 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g41260.2 |
| Rice Genome Annotation | LOC_Os04g41260.2 |
| Ricechip | LOC_Os04g41260.2 |
| KEGG | osa:4336239 dosa:Os04t0490000-01 |
| Entrez-Gene | 4336239 |