RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g41340.1 View Network Show in Genome Browser |
| Other Names | Os04g0490800 |
| Description | 4-nitrophenylphosphatase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24527897-24530505 Nucleotide Length: 1098 |
| Protein-coding | LOC_Os04g41340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g47020 LOC_Os01g58010 LOC_Os04g16680 LOC_Os03g16050 LOC_Os02g18450 LOC_Os03g52840 LOC_Os03g03720 LOC_Os03g16670 LOC_Os02g57100 LOC_Os01g14950 LOC_Os01g24060 More.. |
| Downstream Genes | LOC_Os07g08030 LOC_Os05g06350 LOC_Os04g53230 LOC_Os12g23180 LOC_Os12g08770 LOC_Os06g45440 LOC_Os07g07540 LOC_Os10g41930 LOC_Os08g14580 LOC_Os04g51610 LOC_Os11g41160 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-181 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g41340.1 |
| Rice Genome Annotation | LOC_Os04g41340.1 |
| Ricechip | LOC_Os04g41340.1 |
| KEGG | osa:4336245 dosa:Os04t0490800-01 |
| Entrez-Gene | 4336245 |