RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g41820.1 View Network Show in Genome Browser |
| Other Names | Os04g0495500 |
| Description | transcription factor RF2a, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24769903-24773347 Nucleotide Length: 1410 |
| Protein-coding | LOC_Os04g41820 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g25230 |
| Downstream Genes | LOC_Os08g02220 LOC_Os06g46250 LOC_Os08g02250 LOC_Os05g11750 LOC_Os12g42760 LOC_Os09g37510 |
| Reference | |
|---|---|
| PubMed | 18065552 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g41820.1 |
| Rice Genome Annotation | LOC_Os04g41820.1 |
| Ricechip | LOC_Os04g41820.1 |
| KEGG | osa:4336273 dosa:Os04t0495500-01 |
| Entrez-Gene | 4336273 |