RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g42090.2 View Network Show in Genome Browser |
| Other Names | Os04g0498600 |
| Description | CPuORF7 - conserved peptide uORF-containing transcript, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24915049-24918786 Nucleotide Length: 1197 |
| Protein-coding | LOC_Os04g42090 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g01940 LOC_Os02g15550 LOC_Os04g04980 LOC_Os03g63490 LOC_Os01g12570 LOC_Os01g55740 LOC_Os02g05330 LOC_Os02g53420 LOC_Os01g51380 LOC_Os03g02260 LOC_Os01g12560 More.. |
| Downstream Genes | LOC_Os09g37120 LOC_Os07g22600 LOC_Os10g38850 LOC_Os06g33710 LOC_Os06g48750 LOC_Os08g44770 LOC_Os12g43630 LOC_Os06g37180 LOC_Os09g07820 LOC_Os08g36150 LOC_Os07g37650 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2101-5p osa-miR166i-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g42090.2 |
| Rice Genome Annotation | LOC_Os04g42090.2 |
| Ricechip | LOC_Os04g42090.2 |
| KEGG | osa:4336294 dosa:Os04t0498600-01 |
| Entrez-Gene | 4336294 |