RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g42100.1 View Network Show in Genome Browser |
| Other Names | Os04g0498700 |
| Description | retrotransposon protein, putative, unclassified, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24920323-24924654 Nucleotide Length: 1527 |
| Protein-coding | LOC_Os04g42100 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| IEA | ||||
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g47180 LOC_Os03g53630 LOC_Os04g33320 LOC_Os02g22780 LOC_Os02g14929 LOC_Os03g42220 LOC_Os03g59020 |
| Downstream Genes | LOC_Os06g03390 LOC_Os07g43710 LOC_Os11g41890 LOC_Os06g40850 LOC_Os12g34500 LOC_Os05g46550 LOC_Os06g40960 LOC_Os06g47320 LOC_Os06g36700 LOC_Os05g05470 LOC_Os04g46620 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-5461 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g42100.1 |
| Rice Genome Annotation | LOC_Os04g42100.1 |
| Ricechip | LOC_Os04g42100.1 |
| KEGG | osa:4336295 dosa:Os04t0498700-01 |
| Entrez-Gene | 4336295 |