RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g42260.1 View Network Show in Genome Browser |
| Other Names | Os04g0500900 |
| Description | protein phosphatase 2C, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 25001492-25006621 Nucleotide Length: 1059 |
| Protein-coding | LOC_Os04g42260 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g07960 LOC_Os01g71000 LOC_Os03g03410 LOC_Os01g15470 LOC_Os03g60710 LOC_Os03g16010 LOC_Os01g66610 LOC_Os01g40499 LOC_Os02g42110 LOC_Os03g49750 LOC_Os02g09740 More.. |
| Downstream Genes | LOC_Os05g32360 LOC_Os09g06230 LOC_Os06g43840 LOC_Os05g04460 LOC_Os11g39490 LOC_Os05g41950 LOC_Os06g35530 LOC_Os10g02720 LOC_Os12g40279 LOC_Os07g05740 LOC_Os08g35220 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g42260.1 |
| Rice Genome Annotation | LOC_Os04g42260.1 |
| Ricechip | LOC_Os04g42260.1 |
| KEGG | osa:9269012 dosa:Os04t0500900-00 |
| Entrez-Gene | 9269012 |