RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g42270.1 View Network Show in Genome Browser |
| Other Names | Os04g0501000 |
| Description | 60S ribosomal protein L23A, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 25007808-25009995 Nucleotide Length: 459 |
| Protein-coding | LOC_Os04g42270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g14059 LOC_Os01g54870 LOC_Os03g37970 LOC_Os01g10820 LOC_Os01g19840 LOC_Os01g47660 LOC_Os03g40180 LOC_Os03g21940 LOC_Os01g67134 LOC_Os01g59990 LOC_Os02g54470 More.. |
| Downstream Genes | LOC_Os06g35730 LOC_Os05g11710 LOC_Os06g02510 LOC_Os05g28750 LOC_Os05g49030 LOC_Os05g48310 LOC_Os12g38000 LOC_Os05g48220 LOC_Os05g19370 LOC_Os05g39960 LOC_Os04g52361 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g42270.1 |
| Rice Genome Annotation | LOC_Os04g42270.1 |
| Ricechip | LOC_Os04g42270.1 |
| KEGG | osa:4336307 dosa:Os04t0501000-00 |
| Entrez-Gene | 4336307 |