RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g42490.1 View Network Show in Genome Browser |
| Other Names | Os04g0503700 |
| Description | DIE2/ALG10 family, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 25145877-25149607 Nucleotide Length: 1521 |
| Protein-coding | LOC_Os04g42490 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g39710 LOC_Os01g38670 LOC_Os03g03360 LOC_Os01g38680 LOC_Os01g46580 LOC_Os01g14830 LOC_Os03g63430 LOC_Os02g46320 LOC_Os01g11070 LOC_Os02g06540 LOC_Os03g11900 More.. |
| Downstream Genes | LOC_Os05g19480 LOC_Os08g08070 LOC_Os07g37320 LOC_Os07g01560 LOC_Os12g31480 LOC_Os09g12590 LOC_Os12g06570 LOC_Os07g05640 LOC_Os07g07010 LOC_Os09g24924 LOC_Os05g01310 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00563 rn01100 |
| Metacyc Pathways | PWY-5338 PWY-2901 PWY-2881 PWY-2902 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g42490.1 |
| Rice Genome Annotation | LOC_Os04g42490.1 |
| Ricechip | LOC_Os04g42490.1 |
| KEGG | osa:4336325 dosa:Os04t0503700-01 |
| Entrez-Gene | 4336325 |