RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os04g42520.1 View Network Show in Genome Browser
Other Names	Os04g0504000
Description	phosphoribosyl transferase, putative, expressed
Gene Attributes	Chromosome: Chr4 CDS Coordinates (5'-3'): 25165690-25170764 Nucleotide Length: 639
Protein-coding	LOC_Os04g42520

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006810	transport	Biological Process	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0005215	transporter activity	Molecular Function	IEA
GO:0005829	cytosol	Cellular Component	IEA
GO:0005886	plasma membrane	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g30830 LOC_Os01g55820 LOC_Os01g72240 LOC_Os01g65260 LOC_Os02g03540 LOC_Os02g48390 LOC_Os01g72250 LOC_Os01g56620 LOC_Os02g50350 LOC_Os01g49290 LOC_Os02g47120 More..
Downstream Genes	LOC_Os05g35580 LOC_Os05g08950 LOC_Os08g23730 LOC_Os05g38170 LOC_Os11g16370 LOC_Os07g40940 LOC_Os11g34350 LOC_Os05g43690 LOC_Os05g06920 LOC_Os06g41360 LOC_Os08g35620 More..

Pathways
KEGG Pathways	rn00230 rn01100
Metacyc Pathways	P1-PWY SALVADEHYPOX-PWY PWY-5043 P121-PWY PWY-6605 PWY-6610

Reference
PubMed	16514560

Database Links
Gramene	LOC_Os04g42520.1
Rice Genome Annotation	LOC_Os04g42520.1
Ricechip	LOC_Os04g42520.1
KEGG	osa:4336327 dosa:Os04t0504000-01
Entrez-Gene	4336327