RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g42784.1 View Network Show in Genome Browser |
| Other Names | Os04g0507000 |
| Description | DNA mismatch repair protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 25323642-25340031 Nucleotide Length: 3399 |
| Protein-coding | LOC_Os04g42784 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g37920 LOC_Os01g72880 LOC_Os03g40100 LOC_Os03g51990 LOC_Os03g14370 LOC_Os02g34990 LOC_Os04g32110 LOC_Os03g43850 LOC_Os03g29980 LOC_Os01g68930 LOC_Os01g67510 More.. |
| Downstream Genes | LOC_Os07g12710 LOC_Os09g37930 LOC_Os12g05650 LOC_Os08g42100 LOC_Os11g38030 LOC_Os05g02220 LOC_Os11g19720 LOC_Os08g42080 LOC_Os09g39740 LOC_Os12g04980 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g42784.1 |
| Rice Genome Annotation | LOC_Os04g42784.1 |
| Ricechip | LOC_Os04g42784.1 |
| KEGG | osa:4336345 dosa:Os04t0507000-01 |
| Entrez-Gene | 4336345 |