RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g42840.1 View Network Show in Genome Browser |
| Other Names | Os04g0507500 |
| Description | HEAT repeat family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 25349743-25361092 Nucleotide Length: 4332 |
| Protein-coding | LOC_Os04g42840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005856 | cytoskeleton | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g49000 LOC_Os03g49730 LOC_Os03g18180 LOC_Os02g47150 LOC_Os03g16920 LOC_Os02g10790 LOC_Os03g19960 LOC_Os03g15940 LOC_Os03g05730 LOC_Os01g51300 LOC_Os03g38010 More.. |
| Downstream Genes | LOC_Os04g52460 LOC_Os12g22630 LOC_Os10g35580 LOC_Os08g42020 LOC_Os05g02490 LOC_Os11g32960 LOC_Os09g33450 LOC_Os05g36090 LOC_Os10g41960 LOC_Os05g28290 LOC_Os06g36590 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2873a |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g42840.1 |
| Rice Genome Annotation | LOC_Os04g42840.1 |
| Ricechip | LOC_Os04g42840.1 |
| KEGG | osa:4336347 dosa:Os04t0507500-01 |
| Entrez-Gene | 4336347 |