RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g42920.1 View Network Show in Genome Browser |
| Other Names | Os04g0508200 |
| Description | dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 25389337-25395545 Nucleotide Length: 1437 |
| Protein-coding | LOC_Os04g42920 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g38200 LOC_Os03g45320 LOC_Os01g16900 LOC_Os01g46610 LOC_Os04g40310 LOC_Os01g14580 LOC_Os01g67510 LOC_Os01g71690 LOC_Os03g43850 LOC_Os02g38840 LOC_Os02g39890 More.. |
| Downstream Genes | LOC_Os05g49760 LOC_Os10g10244 LOC_Os07g15440 LOC_Os11g19720 LOC_Os06g10280 LOC_Os11g38900 LOC_Os10g31950 LOC_Os06g13660 LOC_Os12g31370 LOC_Os11g04954 LOC_Os09g20820 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00480 rn00720 rn01100 rn01120 rn00020 rn01110 rn01210 |
| Metacyc Pathways | TCA ANARESP1-PWY P105-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g42920.1 |
| Rice Genome Annotation | LOC_Os04g42920.1 |
| Ricechip | LOC_Os04g42920.1 |
| KEGG | osa:4336353 dosa:Os04t0508200-01 |
| Entrez-Gene | 4336353 |