RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g42990.1 View Network Show in Genome Browser |
| Other Names | Os04g0508900 |
| Description | suppressor of stem-loop protein 1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 25435287-25438940 Nucleotide Length: 1299 |
| Protein-coding | LOC_Os04g42990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g03340 LOC_Os01g49680 LOC_Os03g13970 LOC_Os02g20430 LOC_Os01g08970 LOC_Os03g10780 LOC_Os03g52750 LOC_Os02g53500 LOC_Os03g29470 LOC_Os03g45410 LOC_Os01g23630 More.. |
| Downstream Genes | LOC_Os08g25060 LOC_Os05g05260 LOC_Os05g32600 LOC_Os07g22950 LOC_Os05g08970 LOC_Os08g08200 LOC_Os10g35290 LOC_Os05g43450 LOC_Os06g19980 LOC_Os11g08330 LOC_Os10g37490 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g42990.1 |
| Rice Genome Annotation | LOC_Os04g42990.1 |
| Ricechip | LOC_Os04g42990.1 |
| KEGG | osa:4336358 dosa:Os04t0508900-00 |
| Entrez-Gene | 4336358 |