RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g43070.1 View Network Show in Genome Browser |
| Other Names | Os04g0509600 |
| Description | ammonium transporter protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 25500158-25502633 Nucleotide Length: 1497 |
| Protein-coding | LOC_Os04g43070 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g02600 LOC_Os02g41500 LOC_Os03g35600 LOC_Os04g30490 LOC_Os01g26174 LOC_Os03g63520 LOC_Os01g38500 |
| Downstream Genes | LOC_Os08g03350 LOC_Os05g04220 LOC_Os06g09340 LOC_Os09g22450 LOC_Os10g30540 LOC_Os04g44910 LOC_Os04g44900 LOC_Os06g48060 LOC_Os10g39710 LOC_Os05g27950 LOC_Os05g24550 More.. |
| Reference | |
|---|---|
| PubMed | 12803618 12881500 21385389 14701935 22531935 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g43070.1 |
| Rice Genome Annotation | LOC_Os04g43070.1 |
| Ricechip | LOC_Os04g43070.1 |
| KEGG | osa:4336365 dosa:Os04t0509600-01 |
| Entrez-Gene | 4336365 |