RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g43300.1 View Network Show in Genome Browser |
| Other Names | Os04g0512400 |
| Description | BRCA1 C Terminus domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 25611673-25615824 Nucleotide Length: 1890 |
| Protein-coding | LOC_Os04g43300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g71256 LOC_Os03g49210 LOC_Os02g32860 LOC_Os04g39780 LOC_Os01g44950 LOC_Os03g05260 LOC_Os02g03060 LOC_Os03g02680 LOC_Os03g01850 LOC_Os01g01689 LOC_Os03g43890 More.. |
| Downstream Genes | LOC_Os11g08660 LOC_Os08g31930 LOC_Os06g05190 LOC_Os11g31890 LOC_Os04g51700 LOC_Os05g43610 LOC_Os11g36390 LOC_Os06g47580 LOC_Os07g23110 LOC_Os09g26870 LOC_Os08g31840 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g43300.1 |
| Rice Genome Annotation | LOC_Os04g43300.1 |
| Ricechip | LOC_Os04g43300.1 |
| KEGG | osa:4336384 dosa:Os04t0512400-01 |
| Entrez-Gene | 4336384 |