RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g43390.1 View Network Show in Genome Browser |
| Other Names | Os04g0513400 |
| Description | Os4bglu16 - monolignol beta-glucoside homologue, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 25658227-25666730 Nucleotide Length: 1443 |
| Protein-coding | LOC_Os04g43390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g15860 LOC_Os02g42810 LOC_Os02g57410 |
| Downstream Genes | LOC_Os07g47590 LOC_Os09g28910 LOC_Os07g39900 LOC_Os04g45810 LOC_Os10g38870 LOC_Os12g13940 LOC_Os09g19820 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 rn01110 rn00460 rn00940 |
| Metacyc Pathways | PWY-5176 PWY-4441 PWY-3121 PWY-6002 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g43390.1 |
| Rice Genome Annotation | LOC_Os04g43390.1 |
| Ricechip | LOC_Os04g43390.1 |
| KEGG | osa:4336389 dosa:Os04t0513400-01 |
| Entrez-Gene | 4336389 |