RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g43420.1 View Network Show in Genome Browser |
| Other Names | Os04g0514400 |
| Description | PTAC5, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 25700861-25703587 Nucleotide Length: 1104 |
| Protein-coding | LOC_Os04g43420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g50730 LOC_Os01g13570 LOC_Os03g63950 LOC_Os01g25600 |
| Downstream Genes | LOC_Os10g40830 LOC_Os06g13180 LOC_Os08g27010 LOC_Os11g05280 LOC_Os11g05260 LOC_Os04g44340 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g43420.1 |
| Rice Genome Annotation | LOC_Os04g43420.1 |
| Ricechip | LOC_Os04g43420.1 |
| KEGG | osa:4336393 dosa:Os04t0514400-01 |
| Entrez-Gene | 4336393 |