RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g43680.1 View Network Show in Genome Browser |
| Other Names | Os04g0517100 |
| Description | MYB family transcription factor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 25843038-25844912 Nucleotide Length: 774 |
| Protein-coding | LOC_Os04g43680 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08330 LOC_Os03g53020 LOC_Os03g55540 LOC_Os03g01740 LOC_Os02g11070 LOC_Os02g41510 LOC_Os02g08440 LOC_Os02g41670 LOC_Os01g28790 LOC_Os03g52410 LOC_Os01g67820 More.. |
| Downstream Genes | LOC_Os06g46950 LOC_Os05g21180 LOC_Os10g25230 LOC_Os06g47840 LOC_Os09g24580 LOC_Os05g25920 LOC_Os08g42600 LOC_Os12g39210 LOC_Os12g31810 LOC_Os06g44010 LOC_Os05g34240 More.. |
| Reference | |
|---|---|
| PubMed | 20619667 14675437 20807373 22246661 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g43680.1 |
| Rice Genome Annotation | LOC_Os04g43680.1 |
| Ricechip | LOC_Os04g43680.1 |
| KEGG | osa:4336407 dosa:Os04t0517100-01 |
| Entrez-Gene | 4336407 |