RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os04g43800.1 View Network Show in Genome Browser
Other Names	Os04g0518400
Description	phenylalanine ammonia-lyase, putative, expressed
Gene Attributes	Chromosome: Chr4 CDS Coordinates (5'-3'): 25926988-25929732 Nucleotide Length: 2145
Protein-coding	LOC_Os04g43800

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009056	catabolic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0019748	secondary metabolic process	Biological Process	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005737	cytoplasm	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g58920 LOC_Os03g21950 LOC_Os03g19280 LOC_Os03g19930 LOC_Os02g19970 LOC_Os04g36740 LOC_Os01g46980 LOC_Os02g45344 LOC_Os03g16920 LOC_Os01g53370 LOC_Os02g01010 More..
Downstream Genes	LOC_Os10g17260 LOC_Os05g24550 LOC_Os07g49520 LOC_Os06g06090 LOC_Os11g09280 LOC_Os06g08770 LOC_Os04g55720 LOC_Os09g26880 LOC_Os06g14030 LOC_Os10g38950 LOC_Os08g22354 More..

Pathways
KEGG Pathways	rn00010 rn00680 rn01100 rn01110 rn01120 rn00360 rn00940 rn00910
Metacyc Pathways	P124-PWY ANAEROFRUCAT-PWY ANARESP1-PWY GLUCONEO-PWY PWY-1042 PWY-3801 GLYCOLYSIS PWY1F-467 PWY-1121 PWY-981 PWY-6444 PWY-5883 PWY-6457

Database Links
Gramene	LOC_Os04g43800.1
Rice Genome Annotation	LOC_Os04g43800.1
Ricechip	LOC_Os04g43800.1
KEGG	osa:4336415 dosa:Os04t0518400-01
Entrez-Gene	4336415