RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g44400.1 View Network Show in Genome Browser |
| Other Names | Os04g0525600 |
| Description | OsClp7 - Putative Clp protease homologue, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 26284657-26285880 Nucleotide Length: 930 |
| Protein-coding | LOC_Os04g44400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g19150 LOC_Os02g35630 LOC_Os01g66330 LOC_Os03g19350 LOC_Os01g54040 LOC_Os02g04440 LOC_Os02g30150 LOC_Os02g02960 LOC_Os01g59140 LOC_Os03g41612 LOC_Os02g53060 More.. |
| Downstream Genes | LOC_Os05g45750 LOC_Os07g48960 LOC_Os06g20320 LOC_Os12g32790 LOC_Os09g36300 LOC_Os05g44590 LOC_Os12g32710 LOC_Os11g45780 LOC_Os09g34970 LOC_Os11g37510 LOC_Os07g25420 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g44400.1 |
| Rice Genome Annotation | LOC_Os04g44400.1 |
| Ricechip | LOC_Os04g44400.1 |
| KEGG | osa:4336449 dosa:Os04t0525600-01 |
| Entrez-Gene | 4336449 |