RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g44440.1 View Network Show in Genome Browser |
| Other Names | Os04g0526000 |
| Description | TCP family transcription factor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 26310603-26311673 Nucleotide Length: 621 |
| Protein-coding | LOC_Os04g44440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g55930 LOC_Os03g50810 LOC_Os02g38240 LOC_Os03g03020 LOC_Os01g11550 LOC_Os03g36540 LOC_Os03g14040 LOC_Os03g08790 LOC_Os01g48690 LOC_Os03g18020 LOC_Os02g15690 More.. |
| Downstream Genes | LOC_Os05g43760 LOC_Os05g09400 LOC_Os08g25900 LOC_Os04g58840 LOC_Os09g26810 LOC_Os05g01950 LOC_Os09g32988 LOC_Os08g42850 LOC_Os06g05550 LOC_Os09g34140 LOC_Os07g34950 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g44440.1 |
| Rice Genome Annotation | LOC_Os04g44440.1 |
| Ricechip | LOC_Os04g44440.1 |
| KEGG | osa:4336452 dosa:Os04t0526000-01 |
| Entrez-Gene | 4336452 |