RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g45190.3 View Network Show in Genome Browser |
| Other Names | Os04g0534400 |
| Description | MSP domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 26712547-26715739 Nucleotide Length: 471 |
| Protein-coding | LOC_Os04g45190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g70790 LOC_Os03g09250 LOC_Os01g14932 LOC_Os01g68950 LOC_Os01g68940 LOC_Os03g15900 LOC_Os03g15250 LOC_Os03g15240 LOC_Os03g56820 LOC_Os01g36620 LOC_Os03g50320 More.. |
| Downstream Genes | LOC_Os10g40590 LOC_Os10g22450 LOC_Os05g44310 LOC_Os06g30320 LOC_Os06g33210 LOC_Os11g01420 LOC_Os12g01430 LOC_Os06g09570 LOC_Os04g52460 LOC_Os07g01920 LOC_Os09g04110 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g45190.3 |
| Rice Genome Annotation | LOC_Os04g45190.3 |
| Ricechip | LOC_Os04g45190.3 |
| KEGG | osa:4336509 dosa:Os04t0534400-01 |
| Entrez-Gene | 4336509 |