RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g45290.1 View Network Show in Genome Browser |
| Other Names | Os04g0535600 |
| Description | glycosyl hydrolases, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 26765199-26771893 Nucleotide Length: 1428 |
| Protein-coding | LOC_Os04g45290 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g02890 LOC_Os01g64270 LOC_Os03g51610 LOC_Os02g10860 LOC_Os03g11440 LOC_Os01g63220 LOC_Os01g09460 LOC_Os01g06220 LOC_Os03g14500 LOC_Os03g40550 LOC_Os03g17870 More.. |
| Downstream Genes | LOC_Os07g33220 LOC_Os11g08090 LOC_Os12g31850 LOC_Os11g45890 LOC_Os10g22450 LOC_Os09g34970 LOC_Os09g17840 LOC_Os09g17830 LOC_Os09g10840 LOC_Os06g14400 LOC_Os09g36800 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00052 rn01100 rn00500 |
| Metacyc Pathways | SUCUTIL-PWY PWY-621 PWY-862 PWY-822 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g45290.1 |
| Rice Genome Annotation | LOC_Os04g45290.1 |
| Ricechip | LOC_Os04g45290.1 |
| KEGG | osa:4336515 dosa:Os04t0535600-01 |
| Entrez-Gene | 4336515 |