RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g45490.1 View Network Show in Genome Browser |
| Other Names | Os04g0538166,Os04g0538100 |
| Description | elongation factor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 26917882-26920646 Nucleotide Length: 2055 |
| Protein-coding | LOC_Os04g45490 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g10060 LOC_Os02g04460 LOC_Os03g60400 LOC_Os01g61814 LOC_Os01g14830 LOC_Os02g38210 LOC_Os03g63410 LOC_Os03g14530 LOC_Os02g24614 LOC_Os03g17580 LOC_Os03g08020 More.. |
| Downstream Genes | LOC_Os11g29190 LOC_Os10g08930 LOC_Os12g33240 LOC_Os06g34780 LOC_Os06g04290 LOC_Os11g37510 LOC_Os05g49320 LOC_Os07g23244 LOC_Os12g30490 LOC_Os05g22830 LOC_Os06g35470 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g45490.1 |
| Rice Genome Annotation | LOC_Os04g45490.1 |
| Ricechip | LOC_Os04g45490.1 |
| KEGG | osa:4336525 dosa:Os04t0538166-00dosa:Os04t0538100-01 |