RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g45810.1 View Network Show in Genome Browser |
| Other Names | Os04g0541700 |
| Description | homeobox associated leucine zipper, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 27124166-27125512 Nucleotide Length: 831 |
| Protein-coding | LOC_Os04g45810 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g41460 LOC_Os01g48170 LOC_Os01g70740 LOC_Os04g45010 LOC_Os03g15940 LOC_Os02g42820 LOC_Os04g43390 LOC_Os01g72460 LOC_Os02g49700 LOC_Os03g06630 LOC_Os01g21420 More.. |
| Downstream Genes | LOC_Os05g48820 LOC_Os12g29400 LOC_Os10g35930 LOC_Os08g32080 LOC_Os05g51670 LOC_Os09g21180 |
| Reference | |
|---|---|
| PubMed | 23109182 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g45810.1 |
| Rice Genome Annotation | LOC_Os04g45810.1 |
| Ricechip | LOC_Os04g45810.1 |
| KEGG | osa:4336542 dosa:Os04t0541700-01 |
| Entrez-Gene | 4336542 |