RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g46050.1 View Network Show in Genome Browser |
| Other Names | Os04g0544900 |
| Description | Alg9-like mannosyltransferase protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 27275215-27282769 Nucleotide Length: 1494 |
| Protein-coding | LOC_Os04g46050 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g11070 LOC_Os02g02110 LOC_Os01g39810 LOC_Os03g47780 LOC_Os03g60939 LOC_Os02g12740 LOC_Os03g56460 LOC_Os02g24134 LOC_Os03g04410 LOC_Os03g56820 LOC_Os03g17310 More.. |
| Downstream Genes | LOC_Os12g42876 LOC_Os12g42884 LOC_Os08g09200 LOC_Os06g14510 LOC_Os07g10830 LOC_Os05g05200 LOC_Os05g33390 LOC_Os06g45710 LOC_Os12g43363 LOC_Os06g45120 LOC_Os09g30418 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00510 rn00513 rn01100 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g46050.1 |
| Rice Genome Annotation | LOC_Os04g46050.1 |
| Ricechip | LOC_Os04g46050.1 |
| KEGG | osa:4336560 dosa:Os04t0544900-01 |
| Entrez-Gene | 4336560 |