RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g46190.1 View Network Show in Genome Browser |
| Other Names | Os04g0546400 |
| Description | ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 27358198-27361232 Nucleotide Length: 672 |
| Protein-coding | LOC_Os04g46190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g42320 LOC_Os03g26970 LOC_Os01g22490 LOC_Os03g13170 LOC_Os03g63920 LOC_Os01g70020 LOC_Os03g08280 LOC_Os03g06670 LOC_Os03g18380 LOC_Os03g25450 LOC_Os02g06640 More.. |
| Downstream Genes | LOC_Os11g42420 LOC_Os05g06770 LOC_Os07g39780 LOC_Os09g39500 LOC_Os07g46660 LOC_Os11g01510 LOC_Os11g29400 LOC_Os06g02144 LOC_Os12g01520 LOC_Os09g38530 LOC_Os07g49230 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g46190.1 |
| Rice Genome Annotation | LOC_Os04g46190.1 |
| Ricechip | LOC_Os04g46190.1 |
| KEGG | osa:4336569 dosa:Os04t0546400-01 |
| Entrez-Gene | 4336569 |