RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g46220.1 View Network Show in Genome Browser |
| Other Names | Os04g0546800 |
| Description | ethylene-responsive transcription factor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 27370862-27373629 Nucleotide Length: 957 |
| Protein-coding | LOC_Os04g46220 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005635 | nuclear envelope | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g47900 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR160d-3p osa-miR171e-5p |
| Reference | |
|---|---|
| PubMed | 18313797 21828106 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g46220.1 |
| Rice Genome Annotation | LOC_Os04g46220.1 |
| Ricechip | LOC_Os04g46220.1 |
| KEGG | osa:4336571 dosa:Os04t0546800-01 |
| Entrez-Gene | 4336571 |