RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g46240.1 View Network Show in Genome Browser |
| Other Names | Os04g0547500 |
| Description | AP2 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 27398303-27399259 Nucleotide Length: 957 |
| Protein-coding | LOC_Os04g46240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g34140 LOC_Os02g33680 LOC_Os02g54050 LOC_Os02g09980 LOC_Os02g09990 LOC_Os03g16090 LOC_Os01g17050 LOC_Os01g74250 LOC_Os02g09970 LOC_Os01g08670 LOC_Os01g63690 More.. |
| Downstream Genes | LOC_Os10g37400 LOC_Os07g38610 LOC_Os04g58810 LOC_Os05g48880 LOC_Os05g27890 LOC_Os12g14110 LOC_Os04g48850 LOC_Os05g01940 LOC_Os06g11510 LOC_Os09g29310 LOC_Os07g46360 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g46240.1 |
| Rice Genome Annotation | LOC_Os04g46240.1 |
| Ricechip | LOC_Os04g46240.1 |