RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g46350.1 View Network Show in Genome Browser |
| Other Names | Os04g0548700 |
| Description | homeobox associated leucine zipper, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 27477579-27479717 Nucleotide Length: 744 |
| Protein-coding | LOC_Os04g46350 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g14840 LOC_Os01g55200 LOC_Os02g17970 LOC_Os02g55970 LOC_Os01g45990 LOC_Os01g11250 LOC_Os01g52070 LOC_Os02g02424 LOC_Os01g48170 LOC_Os04g45010 LOC_Os03g15940 More.. |
| Downstream Genes | LOC_Os06g04870 LOC_Os08g04270 LOC_Os06g04850 LOC_Os06g07830 LOC_Os08g04290 LOC_Os07g07910 LOC_Os10g23090 LOC_Os06g14310 LOC_Os10g26500 LOC_Os05g35410 LOC_Os10g35930 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR529a |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g46350.1 |
| Rice Genome Annotation | LOC_Os04g46350.1 |
| Ricechip | LOC_Os04g46350.1 |
| KEGG | osa:4336580 dosa:Os04t0548700-01 |
| Entrez-Gene | 4336580 |