RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os04g46560.1 View Network Show in Genome Browser
Other Names	Os04g0551200
Description	lactate/malate dehydrogenase, putative, expressed
Gene Attributes	Chromosome: Chr4 CDS Coordinates (5'-3'): 27605166-27608347 Nucleotide Length: 1059
Protein-coding	LOC_Os04g46560

Gene Ontology Classification
GO	Name	Type	Code
GO:0005975	carbohydrate metabolic process	Biological Process	IEA
GO:0009056	catabolic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006091	generation of precursor metabolites and energy	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005575	cellular_component	Cellular Component	IEA
GO:0005829	cytosol	Cellular Component	IEA
GO:0005886	plasma membrane	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os02g07490 LOC_Os03g63500 LOC_Os01g22520 LOC_Os04g32020 LOC_Os01g23610 LOC_Os01g61380 LOC_Os01g46070 LOC_Os01g58380 LOC_Os03g56280 LOC_Os02g40830 LOC_Os04g32330 More..
Downstream Genes	LOC_Os06g45590 LOC_Os11g26850 LOC_Os08g02640 LOC_Os08g16480 LOC_Os09g20440 LOC_Os05g06750 LOC_Os07g04240 LOC_Os07g38970 LOC_Os08g33720 LOC_Os05g49880 LOC_Os07g49520 More..

miRNA Regulations
miRNAs	osa-miR5500

Pathways
KEGG Pathways	rn00010 rn00620 rn01100 rn01110 rn01120 rn00020 rn00630 rn00680 rn00710 rn00720
Metacyc Pathways	P124-PWY ANAEROFRUCAT-PWY PWY-3801 MALATE-ASPARTATE-SHUTTLE-PWY TCA ANARESP1-PWY GLUCONEO-PWY FERMENTATION-PWY P23-PWY P105-PWY

Database Links
Gramene	LOC_Os04g46560.1
Rice Genome Annotation	LOC_Os04g46560.1
Ricechip	LOC_Os04g46560.1
KEGG	osa:4336595 dosa:Os04t0551200-01
Entrez-Gene	4336595