RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g46730.4 View Network Show in Genome Browser |
| Other Names | Os04g0553300,Os04g0553401 |
| Description | thioesterase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 27700899-27702656 Nucleotide Length: 372 |
| Protein-coding | LOC_Os04g46730 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g19990 LOC_Os03g62370 LOC_Os03g28980 LOC_Os03g38800 LOC_Os02g11050 LOC_Os04g39190 LOC_Os01g39250 LOC_Os01g39260 LOC_Os01g43150 LOC_Os02g10640 LOC_Os01g45450 More.. |
| Downstream Genes | LOC_Os07g44410 LOC_Os06g45820 LOC_Os07g33410 LOC_Os07g33390 LOC_Os06g39870 LOC_Os05g44350 LOC_Os06g07630 LOC_Os06g40560 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00061 rn00940 rn00941 rn00945 rn01110 |
| Metacyc Pathways | PWY-5148 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g46730.4 |
| Rice Genome Annotation | LOC_Os04g46730.4 |
| Ricechip | LOC_Os04g46730.4 |
| KEGG | osa:4336608 osa:9266254 dosa:Os04t0553300-01dosa:Os04t0553401-00 |
| Entrez-Gene | 4336608 |