RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g46860.1 View Network Show in Genome Browser |
| Other Names | Os04g0555000 |
| Description | scarecrow, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 27764666-27767328 Nucleotide Length: 2136 |
| Protein-coding | LOC_Os04g46860 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g54340 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR171a osa-miR171b osa-miR171c-3p osa-miR171d-3p osa-miR171e-3p osa-miR171f-3p osa-miR171i-3p
|
| Database Links | |
|---|---|
| Gramene | LOC_Os04g46860.1 |
| Rice Genome Annotation | LOC_Os04g46860.1 |
| Ricechip | LOC_Os04g46860.1 |
| KEGG | osa:4336617 dosa:Os04t0555000-01 |
| Entrez-Gene | 4336617 |