RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g46940.1 View Network Show in Genome Browser |
| Other Names | Os04g0556000 |
| Description | copper-transporting ATPase 3, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 27829775-27835535 Nucleotide Length: 3009 |
| Protein-coding | LOC_Os04g46940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g32814 LOC_Os03g02860 LOC_Os04g44354 LOC_Os03g60960 LOC_Os01g59110 LOC_Os01g53420 LOC_Os01g53380 LOC_Os01g53350 LOC_Os01g53370 LOC_Os01g53390 LOC_Os03g06080 More.. |
| Downstream Genes | LOC_Os08g10480 LOC_Os04g48410 LOC_Os05g33390 LOC_Os10g18530 LOC_Os09g34230 LOC_Os08g38160 LOC_Os07g13800 LOC_Os06g18790 LOC_Os05g42060 LOC_Os05g45820 LOC_Os10g18480 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g46940.1 |
| Rice Genome Annotation | LOC_Os04g46940.1 |
| Ricechip | LOC_Os04g46940.1 |
| KEGG | osa:4336625 dosa:Os04t0556000-01 |
| Entrez-Gene | 4336625 |