RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g47120.1 View Network Show in Genome Browser |
| Other Names | Os04g0558400 |
| Description | acyl-CoA thioesterase 2, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 27984109-27990562 Nucleotide Length: 1287 |
| Protein-coding | LOC_Os04g47120 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g43844 LOC_Os03g55100 LOC_Os01g57370 LOC_Os02g07490 LOC_Os01g61510 LOC_Os01g61550 LOC_Os02g34580 LOC_Os01g65000 LOC_Os03g62200 LOC_Os04g27020 LOC_Os03g53780 More.. |
| Downstream Genes | LOC_Os07g44140 LOC_Os07g44110 LOC_Os07g11870 LOC_Os06g09210 LOC_Os07g11970 LOC_Os07g23570 LOC_Os10g10180 LOC_Os12g01420 LOC_Os11g01410 LOC_Os05g39240 LOC_Os06g09220 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-5148 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g47120.1 |
| Rice Genome Annotation | LOC_Os04g47120.1 |
| Ricechip | LOC_Os04g47120.1 |
| KEGG | osa:4336637 dosa:Os04t0558400-01 |
| Entrez-Gene | 4336637 |