RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g47240.2 View Network Show in Genome Browser |
| Other Names | Os04g0559800 |
| Description | STE_MEKK_ste11_MAP3K.17 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28049241-28056934 Nucleotide Length: 2685 |
| Protein-coding | LOC_Os04g47240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05630 LOC_Os03g02780 LOC_Os02g45940 LOC_Os01g61920 LOC_Os03g42220 LOC_Os02g36974 LOC_Os03g22830 LOC_Os01g63270 LOC_Os02g55560 LOC_Os04g38870 LOC_Os03g05730 More.. |
| Downstream Genes | LOC_Os07g32380 LOC_Os10g39410 LOC_Os09g38020 LOC_Os09g26340 LOC_Os07g36500 LOC_Os05g39050 LOC_Os05g38740 LOC_Os04g49420 LOC_Os06g02620 LOC_Os06g48300 LOC_Os05g26890 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g47240.2 |
| Rice Genome Annotation | LOC_Os04g47240.2 |
| Ricechip | LOC_Os04g47240.2 |
| KEGG | osa:4336647 dosa:Os04t0559800-01 |
| Entrez-Gene | 4336647 |