RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g47380.1 View Network Show in Genome Browser |
| Other Names | Os04g0561700 |
| Description | coiled-coil domain-containing protein 139, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28117978-28122646 Nucleotide Length: 1143 |
| Protein-coding | LOC_Os04g47380 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g04750 LOC_Os03g48590 LOC_Os03g45410 LOC_Os02g18550 LOC_Os03g10340 LOC_Os03g08280 LOC_Os03g40180 LOC_Os03g05980 LOC_Os02g49610 LOC_Os02g06700 LOC_Os03g10070 More.. |
| Downstream Genes | LOC_Os10g32820 LOC_Os12g39070 LOC_Os11g08940 LOC_Os05g47480 LOC_Os12g21798 LOC_Os07g42260 LOC_Os05g30530 LOC_Os05g19370 LOC_Os09g36440 LOC_Os04g56480 LOC_Os07g02210 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g47380.1 |
| Rice Genome Annotation | LOC_Os04g47380.1 |
| Ricechip | LOC_Os04g47380.1 |
| KEGG | osa:4336659 dosa:Os04t0561700-01 |
| Entrez-Gene | 4336659 |