RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g47580.1 View Network Show in Genome Browser |
| Other Names | Os04g0563700 |
| Description | cyclin, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28218714-28221677 Nucleotide Length: 1263 |
| Protein-coding | LOC_Os04g47580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g03060 LOC_Os03g02680 LOC_Os03g01850 LOC_Os01g16650 LOC_Os03g05300 LOC_Os04g40940 LOC_Os03g03150 LOC_Os02g10020 LOC_Os02g04240 LOC_Os02g47150 LOC_Os03g38020 More.. |
| Downstream Genes | LOC_Os12g31810 LOC_Os07g32390 LOC_Os12g39210 LOC_Os11g29380 LOC_Os10g25674 LOC_Os05g32600 LOC_Os08g40170 LOC_Os12g02710 LOC_Os11g02740 LOC_Os06g48640 LOC_Os05g43570 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR535-5p |
| Reference | |
|---|---|
| PubMed | 16435118 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g47580.1 |
| Rice Genome Annotation | LOC_Os04g47580.1 |
| Ricechip | LOC_Os04g47580.1 |
| KEGG | osa:4336670 dosa:Os04t0563700-01 |
| Entrez-Gene | 4336670 |