RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g47590.1 View Network Show in Genome Browser |
| Other Names | Os04g0563801 |
| Description | niemann-Pick C1 protein precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28224498-28240823 Nucleotide Length: 3519 |
| Protein-coding | LOC_Os04g47590 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0004872 | receptor activity | Molecular Function | IEA | |
| GO:0004871 | signal transducer activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g56110 LOC_Os02g13130 LOC_Os04g14680 LOC_Os02g57050 LOC_Os03g54100 LOC_Os03g17690 LOC_Os03g58160 LOC_Os01g21180 |
| Downstream Genes | LOC_Os08g40180 LOC_Os09g31970 LOC_Os08g10570 LOC_Os11g42160 LOC_Os06g07090 LOC_Os05g33390 LOC_Os08g01930 LOC_Os07g01810 LOC_Os08g43560 LOC_Os10g05800 LOC_Os09g12790 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444b.1 osa-miR444c.1 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g47590.1 |
| Rice Genome Annotation | LOC_Os04g47590.1 |
| Ricechip | LOC_Os04g47590.1 |
| KEGG | osa:9266400 dosa:Os04t0563801-00 |
| Entrez-Gene | 9266400 |