RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g47690.1 View Network Show in Genome Browser |
| Other Names | Os04g0564600 |
| Description | HMG1/2, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28293183-28296132 Nucleotide Length: 444 |
| Protein-coding | LOC_Os04g47690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003682 | chromatin binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g17910 LOC_Os01g36920 LOC_Os01g36890 |
| Downstream Genes | LOC_Os08g25799 LOC_Os11g06390 LOC_Os08g06040 LOC_Os08g38240 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g47690.1 |
| Rice Genome Annotation | LOC_Os04g47690.1 |
| Ricechip | LOC_Os04g47690.1 |
| KEGG | osa:4336676 dosa:Os04t0564600-01 |
| Entrez-Gene | 4336676 |