RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g47870.2 View Network Show in Genome Browser |
| Other Names | Os04g0566500 |
| Description | PINHEAD, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28426519-28441623 Nucleotide Length: 3306 |
| Protein-coding | LOC_Os04g47870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g02970 LOC_Os03g38740 LOC_Os02g58490 LOC_Os01g62650 LOC_Os02g45070 LOC_Os02g56210 LOC_Os03g58600 LOC_Os03g23050 LOC_Os03g47820 LOC_Os03g46650 LOC_Os02g07310 More.. |
| Downstream Genes | LOC_Os06g51310 LOC_Os06g39640 LOC_Os12g13290 LOC_Os09g27970 LOC_Os07g09020 LOC_Os11g09979 LOC_Os10g34430 LOC_Os07g28850 LOC_Os06g43790 LOC_Os07g37650 LOC_Os06g06420 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR168b |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g47870.2 |
| Rice Genome Annotation | LOC_Os04g47870.2 |
| Ricechip | LOC_Os04g47870.2 |
| KEGG | osa:9270411 dosa:Os04t0566500-03 |
| Entrez-Gene | 9270411 |