RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g48010.1 View Network Show in Genome Browser |
| Other Names | Os04g0568400 |
| Description | WD-40 repeat family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28563829-28567798 Nucleotide Length: 2097 |
| Protein-coding | LOC_Os04g48010 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0004871 | signal transducer activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g40940 |
| Downstream Genes | LOC_Os06g05800 LOC_Os04g52400 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5829 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn00250 rn01100 |
| Metacyc Pathways | DENOVOPURINE2-PWY PWY-841 P121-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g48010.1 |
| Rice Genome Annotation | LOC_Os04g48010.1 |
| Ricechip | LOC_Os04g48010.1 |
| KEGG | osa:4336699 dosa:Os04t0568400-01 |
| Entrez-Gene | 4336699 |