RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g48030.1 View Network Show in Genome Browser |
| Other Names | Os04g0568700 |
| Description | heat stress transcription factor B-1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28574411-28576248 Nucleotide Length: 918 |
| Protein-coding | LOC_Os04g48030 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g56900 LOC_Os01g21420 LOC_Os02g54140 LOC_Os01g69920 LOC_Os03g13450 LOC_Os01g55270 LOC_Os03g17700 LOC_Os02g53770 LOC_Os02g44500 LOC_Os02g33450 LOC_Os03g51550 More.. |
| Downstream Genes | LOC_Os09g35790 LOC_Os10g28340 LOC_Os05g48810 LOC_Os06g06090 LOC_Os11g18170 LOC_Os08g39150 LOC_Os07g38430 LOC_Os06g46900 LOC_Os10g21810 LOC_Os07g08840 LOC_Os05g38530 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1846d-5p |
| Reference | |
|---|---|
| PubMed | 21792744 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g48030.1 |
| Rice Genome Annotation | LOC_Os04g48030.1 |
| Ricechip | LOC_Os04g48030.1 |
| KEGG | osa:4336701 dosa:Os04t0568700-00 |
| Entrez-Gene | 4336701 |