RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g48060.1 View Network Show in Genome Browser |
| Other Names | Os04g0569000 |
| Description | RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28597313-28600302 Nucleotide Length: 1008 |
| Protein-coding | LOC_Os04g48060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g53500 LOC_Os03g57870 LOC_Os03g13850 LOC_Os02g08380 LOC_Os02g56130 LOC_Os03g15810 LOC_Os02g10640 LOC_Os02g20430 LOC_Os02g56000 LOC_Os03g51550 LOC_Os02g53680 More.. |
| Downstream Genes | LOC_Os11g36390 LOC_Os12g07720 LOC_Os06g07630 LOC_Os04g58350 LOC_Os05g48030 LOC_Os10g34750 LOC_Os07g44970 LOC_Os07g22400 LOC_Os06g40560 LOC_Os05g06840 LOC_Os05g06890 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5533 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g48060.1 |
| Rice Genome Annotation | LOC_Os04g48060.1 |
| Ricechip | LOC_Os04g48060.1 |
| KEGG | osa:4336704 dosa:Os04t0569000-01 |
| Entrez-Gene | 4336704 |