RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g48070.1 View Network Show in Genome Browser |
| Other Names | Os04g0569100 |
| Description | homeobox and START domains containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 28600698-28607038 Nucleotide Length: 2442 |
| Protein-coding | LOC_Os04g48070 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g70310 LOC_Os03g04310 |
| Downstream Genes | LOC_Os11g32100 LOC_Os10g39750 LOC_Os07g02350 |
| Pathways | |
|---|---|
| Metacyc Pathways | ANAEROFRUCAT-PWY PWY-1042 PWY-3801 GLYCOLYSIS |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g48070.1 |
| Rice Genome Annotation | LOC_Os04g48070.1 |
| Ricechip | LOC_Os04g48070.1 |
| KEGG | osa:4336705 dosa:Os04t0569100-01 |
| Entrez-Gene | 4336705 |